Alonge, M., Wang, X., Benoit, M., Soyk, S., Pereira, L., Zhang, L., Suresh, H., Ramakrishnan, S., Maumus, F., Ciren, D., Levy, Y., Hai Harel, T., Shalev-Schlosser, G., Amsellem, Z., Razifard, H., Caicedo, A.L., Tieman, D.M., Klee, H., Kirsche, M., Aganezov, S., Rhyker Ranallo-Benavidez, T., Lemmon, Z., Kim, J., Robitaille, G., Kramer, M., Goodwin, S., McCombie, W.R., Hutton, S., Van Eck, J., Gillis, J., Eshed, Y., Sedlazeck, F., van der Knaap, E., Schatz, M.C.Lippman, Z.B. (2020) Major impacts of widespread structural variation on gene expression and crop improvement in tomato. Cell. doi.org/10.1016/j.cell.2020.05.021

Kwon, C.T., Heo, J., Lemmon, Z., Capua, Y., Hutton, S., Van Eck, J., Park, S.J., Lippman, Z.B. (2019) Rapid customization of Solanaceae fruit crops for urban agriculture. Nature Biotechnology. 38(2). 182-188.

Alonge, M., Soyk, S., Ramakrishnan, S., Wang, X., Goodwin, S., Sedlazeck, F.J., Lippman, Z.B., Schatz, M.C. (2019) RaGOO: fast and accurate reference-guided scaffolding of draft genomes.Genome Biology. 20(1): 2